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Table 2 Validation statistics of the homology model of the C-terminal domain of YiiP generated with the PSVS server [28].

From: Three-dimensional structure of β-cell-specific zinc transporter, ZnT-8, predicted from the type 2 diabetes-associated gene variant SLC30A8 R325W

Structure quality factors - overall statistics

 

Mean score

Z-score a

Procheck G-factor (phi/psi only) [29]

- 0.75

- 2.64

Procheck G-factor (all dihedral angles) [29]

- 0.49

- 2.90

Verify3D [30]

0.22

- 3.85

ProsaII (-ve) [31]

0.09

- 2.32

Ramachandran plot summary from Procheck [29]

Most favoured regions

72.0%

 

Additionally allowed regions

17.3%

 

Generously allowed regions

8.0%

 

Disallowed regions

2.7%

 
  1. aWith respect to mean and standard deviation for a set of 252 X-ray structures < 500 residues, of resolution ≤ 1.80 Å, R-factor ≤ 0.25 and R-free ≤ 0.28; a positive value indicates a 'better' score.